Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OTA16542.1Hypothetical protein. (92 aa)    
Predicted Functional Partners:
OTA16543.1
Hypothetical protein.
       0.613
OTA16544.1
Hypothetical protein.
       0.585
OTA16540.1
Hypothetical protein.
       0.559
OTA16541.1
Hypothetical protein.
       0.559
OTA16545.1
Hypothetical protein.
       0.468
OTA16546.1
Hypothetical protein.
       0.468
OTA16547.1
Hypothetical protein.
       0.468
OTA16548.1
Exodeoxyribonuclease VIII.
       0.468
OTA16549.1
Hypothetical protein.
       0.468
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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