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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA16544.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
OTA16543.1
Hypothetical protein.
       0.737
OTA16545.1
Hypothetical protein.
       0.608
OTA16546.1
Hypothetical protein.
       0.608
OTA16547.1
Hypothetical protein.
       0.608
OTA16548.1
Exodeoxyribonuclease VIII.
       0.608
OTA16549.1
Hypothetical protein.
       0.608
OTA16542.1
Hypothetical protein.
       0.585
OTA16540.1
Hypothetical protein.
       0.434
OTA16541.1
Hypothetical protein.
       0.434
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.