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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_0118Hypothetical protein. (136 aa)    
Predicted Functional Partners:
SACE_0117
Response regulator, two-component system.
 
     0.959
SACE_0119
Sodium:solute symporter, SSF; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.883
SACE_0115
Sensor kinase, two-component system.
 
     0.838
SACE_4728
ATP-binding region, ATPase-like.
 
     0.756
SACE_4727
Putative two-component system response regulator.
 
     0.737
SACE_4725
Putative transmembrane transport protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.577
SACE_0116
Possible signal peptide peptidase.
       0.468
SACE_0516
Possible glycoprotein.
  
     0.465
SACE_0404
Putative integral membrane protein.
  
     0.445
SACE_5752
Hypothetical protein.
  
     0.437
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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