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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_0141ECF subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (165 aa)    
Predicted Functional Partners:
SACE_0140
Integral membrane protein.
 
 
 0.933
sigC
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.874
SACE_0138
Hypothetical protein.
       0.829
yfiL
ABC transporter ATP-binding protein.
 
     0.825
SACE_3367
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.823
sigT
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.786
SACE_0234
RNA polymerase sigma-70 factor, ECF family.
  
   
 0.778
SACE_6951
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.723
SACE_7154
RNA polymerase ECF sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.650
sigT-2
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.643
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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