Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cydCDPutative ABC transporter ATP-binding protein. (1090 aa)    
Predicted Functional Partners:
SACE_0142
Putative cytochrome ubiquinol oxidase subunit.
 
  
 0.997
cydB
Cytochrome d ubiquinol oxidase subunit II.
 
  
 0.997
cydA
Cytochrome d ubiquinol oxidase, subunit I.
 
  
 0.980
cydB-2
Cytochrome d ubiquinol oxidase subunit II.
 
  
 0.979
SACE_0430
ABC transporter ATP-binding protein.
  
 
 0.907
SACE_6671
Hypothetical protein.
  
     0.688
SACE_7273
Hypothetical protein.
  
     0.668
narG
Nitrate reductase alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  
 0.645
SACE_6451
Integral membrane protein.
  
     0.625
SACE_1036
Hypothetical protein.
  
     0.624
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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