Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SACE_0353 | estC | SACE_0353 | SACE_0351 | RpiR-family transcriptional regulator. | Esterase. | 0.639 |
SACE_0353 | murQ | SACE_0353 | SACE_0352 | RpiR-family transcriptional regulator. | Putative phophosugar-binding protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. | 0.963 |
SACE_0383 | estC | SACE_0383 | SACE_0351 | Hypothetical protein. | Esterase. | 0.542 |
SACE_1898 | SACE_1899 | SACE_1898 | SACE_1899 | Putative dioxygenase. | Putative HTH-type transcriptional regulator. | 0.918 |
SACE_1898 | estC | SACE_1898 | SACE_0351 | Putative dioxygenase. | Esterase. | 0.485 |
SACE_1899 | SACE_1898 | SACE_1899 | SACE_1898 | Putative HTH-type transcriptional regulator. | Putative dioxygenase. | 0.918 |
SACE_1899 | estC | SACE_1899 | SACE_0351 | Putative HTH-type transcriptional regulator. | Esterase. | 0.559 |
SACE_2800 | estC | SACE_2800 | SACE_0351 | 3-hydroxyisobutyrate dehydrogenase, NAD-binding protein. | Esterase. | 0.548 |
SACE_2875 | SACE_4139 | SACE_2875 | SACE_4139 | Modular polyketide synthase-; Modular PKS with 1 AHBA loading domain similar to GdmAI, and two extension modules, first module has complete set of the reductive domains, and the other one didn't have any reductive domains. Found by M.Oliynyk and sequenced by M.Samborskyy (M0ERY) in 2004/02. If it is active, than it can be responsible for the production of the aromatic poliketide antibiotic with low molecular weight. Thanks to the B. Ostash, A. Luzhetsky and Y. Rebets for help with annotation of this cluster in 2004. | Type I modular polyketide synthase. | 0.998 |
SACE_2875 | SACE_4220 | SACE_2875 | SACE_4220 | Modular polyketide synthase-; Modular PKS with 1 AHBA loading domain similar to GdmAI, and two extension modules, first module has complete set of the reductive domains, and the other one didn't have any reductive domains. Found by M.Oliynyk and sequenced by M.Samborskyy (M0ERY) in 2004/02. If it is active, than it can be responsible for the production of the aromatic poliketide antibiotic with low molecular weight. Thanks to the B. Ostash, A. Luzhetsky and Y. Rebets for help with annotation of this cluster in 2004. | Hypothetical protein. | 0.565 |
SACE_2875 | estC | SACE_2875 | SACE_0351 | Modular polyketide synthase-; Modular PKS with 1 AHBA loading domain similar to GdmAI, and two extension modules, first module has complete set of the reductive domains, and the other one didn't have any reductive domains. Found by M.Oliynyk and sequenced by M.Samborskyy (M0ERY) in 2004/02. If it is active, than it can be responsible for the production of the aromatic poliketide antibiotic with low molecular weight. Thanks to the B. Ostash, A. Luzhetsky and Y. Rebets for help with annotation of this cluster in 2004. | Esterase. | 0.487 |
SACE_4083 | estC | SACE_4083 | SACE_0351 | Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding. | Esterase. | 0.508 |
SACE_4139 | SACE_2875 | SACE_4139 | SACE_2875 | Type I modular polyketide synthase. | Modular polyketide synthase-; Modular PKS with 1 AHBA loading domain similar to GdmAI, and two extension modules, first module has complete set of the reductive domains, and the other one didn't have any reductive domains. Found by M.Oliynyk and sequenced by M.Samborskyy (M0ERY) in 2004/02. If it is active, than it can be responsible for the production of the aromatic poliketide antibiotic with low molecular weight. Thanks to the B. Ostash, A. Luzhetsky and Y. Rebets for help with annotation of this cluster in 2004. | 0.998 |
SACE_4139 | SACE_4220 | SACE_4139 | SACE_4220 | Type I modular polyketide synthase. | Hypothetical protein. | 0.835 |
SACE_4139 | estC | SACE_4139 | SACE_0351 | Type I modular polyketide synthase. | Esterase. | 0.483 |
SACE_4220 | SACE_2875 | SACE_4220 | SACE_2875 | Hypothetical protein. | Modular polyketide synthase-; Modular PKS with 1 AHBA loading domain similar to GdmAI, and two extension modules, first module has complete set of the reductive domains, and the other one didn't have any reductive domains. Found by M.Oliynyk and sequenced by M.Samborskyy (M0ERY) in 2004/02. If it is active, than it can be responsible for the production of the aromatic poliketide antibiotic with low molecular weight. Thanks to the B. Ostash, A. Luzhetsky and Y. Rebets for help with annotation of this cluster in 2004. | 0.565 |
SACE_4220 | SACE_4139 | SACE_4220 | SACE_4139 | Hypothetical protein. | Type I modular polyketide synthase. | 0.835 |
SACE_4220 | estC | SACE_4220 | SACE_0351 | Hypothetical protein. | Esterase. | 0.525 |
estC | SACE_0353 | SACE_0351 | SACE_0353 | Esterase. | RpiR-family transcriptional regulator. | 0.639 |
estC | SACE_0383 | SACE_0351 | SACE_0383 | Esterase. | Hypothetical protein. | 0.542 |
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