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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_0500Putative GntR-family transcriptional regulator. (251 aa)    
Predicted Functional Partners:
SACE_3400
acetyl/propionyl-CoA carboxylase alpha subunit.
      
 0.590
SACE_6509
acetyl/propionyl-CoA carboxylase alpha subunit.
      
 0.590
nagA-2
Putative N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.571
SACE_3972
AraC-family transcriptional regulator.
  
  
 0.506
SACE_5708
Transcriptional regulator, GntR family.
  
    0.485
katA
Catalase; Belongs to the catalase family.
      
 0.479
eryBVII
dTDP-4-deoxyglucose 3,5-epimerase.
      
 0.479
SACE_0142
Putative cytochrome ubiquinol oxidase subunit.
      
 0.477
SACE_6064
Transcriptional regulator, GntR family.
  
    0.477
aveBII
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
      
 0.473
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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