Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SACE_0789ABC-type transporter, ATPase component. (306 aa)    
Predicted Functional Partners:
SACE_0790
ABC transporter membrane protein.
 
  
 0.947
SACE_0788
Two-component system sensor kinase.
 
     0.647
SACE_0787
Putative two-component system response regulator.
 
    0.615
SACE_0796
Putative ABC transporter, integral membrane subunit.
 
  
 0.583
SACE_7043
Putative ABC transporter, integral membrane subunit.
 
  
 0.582
cysS-2
cysteinyl-tRNA synthetase.
  
   
 0.562
SACE_4276
ABC transporter, permease component.
 
  
 0.561
SACE_4028
ABC transporter protein, ATP-binding component.
 
 0.556
SACE_2702
Putative exporter of polyketide antibiotics-like protein.
  
 
 0.548
SACE_0423
Multidrug ABC transporter permease.
 
  
 0.543
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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