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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_0813NAD-dependent epimerase/dehydratase family protein. (210 aa)    
Predicted Functional Partners:
SACE_0812
Transcriptional regulator, HxlR family.
  
  
 0.674
SACE_3941
Hypothetical protein; Predicted acetyltransferase.
  
    0.569
SACE_1496
Permease.
  
    0.553
SACE_3646
NAD-dependent epimerase/dehydratase.
  
     0.519
SACE_3005
Hypothetical protein.
   
    0.499
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
    0.496
SACE_5557
CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
    0.491
arcA
Arginine deiminase.
   
    0.483
SACE_0814
Natural resistance-associated macrophage protein.
       0.461
SACE_2564
Putative zinc-containing alcohol dehydrogenase (oxidoreductase).
  
    0.443
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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