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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_0924Extracellular solute-binding protein, family 1. (482 aa)    
Predicted Functional Partners:
SACE_0926
Binding-protein-dependent transport systems membrane component.
 
 
 0.965
SACE_0925
Binding-protein-dependent transport systems membrane component.
 
 
 0.960
adh10
Zinc-binding dehydrogenase.
 
     0.812
xylB
Xylulose kinase.
 
     0.774
SACE_0928
DeoR family transcriptional regulator of sugar metabolism.
  
    0.742
SACE_6263
ABC sugar transporter, permease component.
 
 
 0.660
SACE_4255
ABC sugar transporter, permease component.
 
 
 0.653
SACE_4256
ABC sugar transporter, permease component.
 
 
 0.649
SACE_4160
ABC sugar transporter, permease component.
 
 
 0.644
SACE_6264
Putative multiple sugar transport system permease protein.
 
 
 0.640
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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