Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SACE_1124Hypothetical protein. (314 aa)    
Predicted Functional Partners:
SACE_1122
DNA repair protein RadA domain protein.
 
     0.829
SACE_1123
C-5 cytosine-specific DNA methylase.
       0.786
SACE_7023
Hypothetical protein.
 
     0.665
SACE_1136
Hypothetical protein.
 
     0.630
SACE_1121
Phage integrase; Belongs to the 'phage' integrase family.
       0.612
SACE_1129
Hypothetical protein.
 
     0.592
SACE_7013
Hypothetical protein.
 
     0.578
ssb
Putative single-strand DNA-binding protein.
       0.577
SACE_6604
Two component system histidine kinase.
  
     0.507
SACE_1126
Hypothetical protein.
       0.503
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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