rnr protein (Saccharopolyspora erythraea) - STRING interaction network

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Predicted Interactions

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[Homology]

Score

rnr

Ribonuclease R. (490 aa)

Predicted Functional Partners:

rph

0.965

SACE_1832

0.876

rpsA

0.607

SACE_2114

0.593

SACE_1601

0.584

pheT

0.577

SACE_0444

0.575

SACE_0626

0.575

SACE_3475

0.575

SACE_3476

0.575

Your Current Organism:

Saccharopolyspora erythraea

NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SACE_0444	SACE_2114	SACE_0444	SACE_2114	tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.608
SACE_0444	pheT	SACE_0444	SACE_5276	tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Putative phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.803
SACE_0444	rnr	SACE_0444	SACE_1600	tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Ribonuclease R.	0.575
SACE_0444	rpsA	SACE_0444	SACE_5431	tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	30S ribosomal protein S1.	0.431
SACE_0626	SACE_2114	SACE_0626	SACE_2114	Hypothetical tRNA/rRNA methyltransferase Rv0881.	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.449
SACE_0626	pheT	SACE_0626	SACE_5276	Hypothetical tRNA/rRNA methyltransferase Rv0881.	Putative phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.597
SACE_0626	rnr	SACE_0626	SACE_1600	Hypothetical tRNA/rRNA methyltransferase Rv0881.	Ribonuclease R.	0.575
SACE_0626	rpsA	SACE_0626	SACE_5431	Hypothetical tRNA/rRNA methyltransferase Rv0881.	30S ribosomal protein S1.	0.510
SACE_1601	rnr	SACE_1601	SACE_1600	NADPH-dependent F420 reductase.	Ribonuclease R.	0.584
SACE_1832	SACE_2114	SACE_1832	SACE_2114	Putative ribonuclease D (partial match).	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.424
SACE_1832	rnr	SACE_1832	SACE_1600	Putative ribonuclease D (partial match).	Ribonuclease R.	0.876
SACE_1832	rph	SACE_1832	SACE_1212	Putative ribonuclease D (partial match).	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.968
SACE_1832	rpsA	SACE_1832	SACE_5431	Putative ribonuclease D (partial match).	30S ribosomal protein S1.	0.981
SACE_2114	SACE_0444	SACE_2114	SACE_0444	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.608
SACE_2114	SACE_0626	SACE_2114	SACE_0626	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Hypothetical tRNA/rRNA methyltransferase Rv0881.	0.449
SACE_2114	SACE_1832	SACE_2114	SACE_1832	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Putative ribonuclease D (partial match).	0.424
SACE_2114	SACE_3475	SACE_2114	SACE_3475	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	tRNA/rRNA methyltransferase.	0.432
SACE_2114	pheT	SACE_2114	SACE_5276	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Putative phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.959
SACE_2114	rnr	SACE_2114	SACE_1600	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribonuclease R.	0.593
SACE_2114	rpsA	SACE_2114	SACE_5431	Ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	30S ribosomal protein S1.	0.849

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