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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gclPutative glyoxylate carboligase; Belongs to the TPP enzyme family. (591 aa)    
Predicted Functional Partners:
SACE_6731
Xylose isomerase domain protein TIM barrel; Belongs to the hyi family.
 
 
 0.971
SACE_6730
2-hydroxy-3-oxopropionate reductase.
 
 
 0.950
SACE_1936
2-hydroxy-3-oxopropionate reductase.
 
 
 0.930
aceB,
Malate synthase A; Belongs to the malate synthase family.
    
 0.918
aceA
Isocitrate lyase.
     
 0.910
serA
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.905
gcl-2
Glyoxylate carboligase; Belongs to the TPP enzyme family.
  
  
 
0.904
glcF
Glycolate oxidase, iron-sulfur subunit.
     
 0.901
glcF-2
Glycolate oxidase iron-sulfur subunit.
     
 0.901
kdgA
KHG/KDPG aldolase.
     
  0.900
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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