STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_1981Protein kinase/transcriptional regulator, LuxR family. (777 aa)    
Predicted Functional Partners:
SACE_6878
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 
 0.540
SACE_0488
Transcriptional regulator, SARP family.
 
 
 0.534
SACE_4110
Putative SARP family pathway specific transcriptional activator.
  
 0.527
SACE_0145
Two-component system sensor kinase.
 
 
 0.520
SACE_3490
Sensor histidine kinase/response regulator.
  
 
 0.454
cdaR-2
Transcriptional regulator.
  
 0.441
SACE_0097
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
  
 0.413
SACE_2846
Two-component response regulator.
  
  
 0.413
SACE_6414
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
  
  
 0.413
SACE_5446
Hypothetical protein; DNA-binding transcriptional activator of the SARP family.
  
 
 0.409
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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