STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_2011Probable transcriptional regulator. (295 aa)    
Predicted Functional Partners:
SACE_2012
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.831
SACE_6598
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.506
SACE_2010
Putative glycosyltransferase.
       0.495
SACE_3407
Transcriptional regulator, TetR family.
  
     0.458
SACE_2661
TetR family transcriptional regulatory protein.
  
     0.421
SACE_3337
Uncharacterized proteins, LmbE homologs.
  
     0.421
SACE_1112
Transcriptional regulator, MarR family.
  
  
 0.411
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.406
SACE_3338
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.405
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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