Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SACE_2137Hypothetical protein. (359 aa)    
Predicted Functional Partners:
SACE_0948
L-fucose isomerase, putative.
 
     0.586
pyrD
Dihydroorotate dehydrogenase; Belongs to the dihydroorotate dehydrogenase family.
 
     0.517
uvrC
Nuclease subunit of the excinuclease ABC complex; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.456
SACE_2139
Uncharacterised P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities.
       0.456
SACE_2140
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
       0.456
whiA
Sporulation regulatory protein; Involved in cell division and chromosome segregation.
       0.456
SACE_6069
Hypothetical protein.
  
     0.452
SACE_1317
alpha-L-fucosidase.
 
   
 0.420
SACE_3903
Glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.411
SACE_5841
Putative ABC transporter sugar-binding protein.
 
     0.401
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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