Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SACE_2170Putative ABC-2 type transport system permease protein. (238 aa)    
Predicted Functional Partners:
SACE_2171
Putative ABC transporter ATP-binding protein.
 
  
 0.892
ctaA
Cytochrome oxidase assembly protein.
 
   
 0.855
SACE_2172
Possible membrane protein.
 
   
 0.825
SACE_2169
Hypothetical protein.
       0.693
SACE_6962
Xylose isomerase-like TIM barrel.
  
     0.561
pup1
Hypothetical protein; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.
  
     0.549
SACE_4975
Protein of unknown function DUF181.
  
  
 0.543
SACE_5991
Acetyltransferase, GNAT family.
  
     0.536
sufB
Putative iron-regulated ABC-type transporter.
     
 0.504
sufD
FeS assembly protein.
     
 0.504
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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