Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SACE_2172Possible membrane protein. (528 aa)    
Predicted Functional Partners:
SACE_2170
Putative ABC-2 type transport system permease protein.
 
   
 0.825
SACE_2171
Putative ABC transporter ATP-binding protein.
   
 
 0.786
SACE_6424
Probable conserved integral membrane protein.
  
     0.752
SACE_0940
Hypothetical protein.
  
     0.749
SACE_7191
Possible secreted protein.
  
     0.730
tolA
Membrane spanning protein.
  
     0.727
SACE_5423
Hypothetical protein.
  
     0.718
SACE_6769
Hypothetical protein.
  
     0.710
SACE_7383
Hypothetical protein.
  
   
 0.707
SACE_7355
Possible membrane protein.
 
     0.706
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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