Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SACE_2173Probable transcriptional regulator. (272 aa)    
Predicted Functional Partners:
sufB
Putative iron-regulated ABC-type transporter.
  
  
 0.970
sufD
FeS assembly protein.
  
  
 0.934
SACE_2176
Putative ABC transporter ATP-binding protein.
  
  
 0.870
SACE_2178
SUF system FeS assembly protein.
  
  
 0.738
SACE_3798
SIR2 family transcriptional regulator.
   
    0.684
SACE_2179
Predicted metal-sulfur cluster biosynthetic enzyme.
     
 0.663
SACE_6221
MarR-transcriptional regulator.
   
    0.654
SACE_2172
Possible membrane protein.
 
     0.649
SACE_4654
Protein kinase/transcriptional regulator, LuxR family.
   
    0.649
SACE_2715
Probable transcriptional regulator, LytR family.
  
    0.643
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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