Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SACE_2452Hypothetical protein. (332 aa)    
Predicted Functional Partners:
SACE_6124
Hypothetical protein.
 
  
 0.764
SACE_2397
Hypothetical protein.
  
  
 0.754
SACE_3488
CBS domain protein.
   
  
 0.726
SACE_4518
Hypothetical protein.
 
   
0.667
SACE_2440
Hypothetical protein.
 
   
0.666
SACE_2427
Hypothetical protein.
 
   
0.660
SACE_2453
Uncharacterized protein conserved in bacteria.
 
   
 0.645
SACE_2434
Hypothetical protein.
  
  
 0.633
fruB
Putative 6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
   
  
 0.597
lacC
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
   
  
 0.597
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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