STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_3003FMN-dependent monooxygenase. (353 aa)    
Predicted Functional Partners:
SACE_3002
Cyclase/dehydrase.
 
     0.884
SACE_6466
LPPG:FO 2-phopspho-L-lactate transferase.
 
   
 0.785
SACE_6467
Nitroreductase family protein.
 
  
 0.766
SACE_1248
Mycobacterium tuberculosis paralogous family 11.
  
   
 0.724
SACE_2918
Hypothetical protein.
  
   
 0.698
SACE_4878
Putative alkanesulfonate monooxygenase.
  
     0.667
SACE_3267
Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.
  
     0.657
SACE_4417
N5,N10-methylenetetrahydromethanopterin reductase-related protein.
  
     0.648
SACE_3822
Hypothetical protein.
  
     0.631
SACE_1633
Probable alkanesulfonate monooxygenase.
  
     0.624
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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