Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SACE_0597 | SACE_3021 | SACE_0597 | SACE_3021 | Glutamine cyclotransferase precursor. | Hypothetical protein. | 0.482 |
SACE_1561 | SACE_3021 | SACE_1561 | SACE_3021 | Hypothetical protein. | Hypothetical protein. | 0.463 |
SACE_2857 | SACE_3021 | SACE_2857 | SACE_3021 | Hypothetical protein. | Hypothetical protein. | 0.570 |
SACE_2857 | sig1 | SACE_2857 | SACE_4197 | Hypothetical protein. | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | 0.538 |
SACE_2857 | sig1-2 | SACE_2857 | SACE_5686 | Hypothetical protein. | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | 0.538 |
SACE_2857 | whiG | SACE_2857 | SACE_6040 | Hypothetical protein. | Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.538 |
SACE_3020 | SACE_3021 | SACE_3020 | SACE_3021 | PE-PGRS family protein. | Hypothetical protein. | 0.447 |
SACE_3021 | SACE_0597 | SACE_3021 | SACE_0597 | Hypothetical protein. | Glutamine cyclotransferase precursor. | 0.482 |
SACE_3021 | SACE_1561 | SACE_3021 | SACE_1561 | Hypothetical protein. | Hypothetical protein. | 0.463 |
SACE_3021 | SACE_2857 | SACE_3021 | SACE_2857 | Hypothetical protein. | Hypothetical protein. | 0.570 |
SACE_3021 | SACE_3020 | SACE_3021 | SACE_3020 | Hypothetical protein. | PE-PGRS family protein. | 0.447 |
SACE_3021 | SACE_3314 | SACE_3021 | SACE_3314 | Hypothetical protein. | Putative surface layer protein. | 0.419 |
SACE_3021 | sig1 | SACE_3021 | SACE_4197 | Hypothetical protein. | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | 0.429 |
SACE_3021 | sig1-2 | SACE_3021 | SACE_5686 | Hypothetical protein. | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | 0.429 |
SACE_3021 | whiG | SACE_3021 | SACE_6040 | Hypothetical protein. | Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.429 |
SACE_3314 | SACE_3021 | SACE_3314 | SACE_3021 | Putative surface layer protein. | Hypothetical protein. | 0.419 |
sig1 | SACE_2857 | SACE_4197 | SACE_2857 | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.538 |
sig1 | SACE_3021 | SACE_4197 | SACE_3021 | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.429 |
sig1-2 | SACE_2857 | SACE_5686 | SACE_2857 | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.538 |
sig1-2 | SACE_3021 | SACE_5686 | SACE_3021 | RNA polymerase sigma factor; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.429 |
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