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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_3076Hydrogenase nickel incorporation protein HypB. (298 aa)    
Predicted Functional Partners:
hypA1
Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.989
SACE_3073
Hydrogenase expression/formation protein HypD.
 
  
 0.986
hybG
Hydrogenase-2 operon protein.
 
  
 0.984
SACE_3074
Hydrogenase expression/formation protein HypE.
 
  
 0.974
SACE_3061
NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
  
 0.914
SACE_3070
Response regulator receiver protein.
  
  
 0.873
hypF1
[NiFe] hydrogenase maturation protein HypF.
 
   
 0.872
SACE_3062
Hydrogen:quinone oxidoreductase.
 
  
 0.862
ureA-2
Urease beta/gamma subunit.
  
  
 0.835
ureA-3
Urease beta/gamma subunit.
  
  
 0.835
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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