STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_3207Oxidoreductase domain protein. (312 aa)    
Predicted Functional Partners:
SACE_3206
Hypothetical protein.
     0.963
SACE_3210
Xylose isomerase domain protein TIM barrel.
 
  
 0.947
SACE_3209
Hypothetical protein.
 
    0.945
SACE_3211
Hypothetical protein.
 
     0.918
SACE_3208
malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
     0.878
SACE_3215
Hypothetical protein; Phytoene dehydrogenase.
 
     0.801
SACE_3213
DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.754
SACE_3212
DegT/DnrJ/EryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.728
SACE_3216
Long-chain acyl-CoA synthetase, putative.
 
     0.697
rifL
Putative oxidoreductase.
  
     0.660
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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