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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_3232Transcriptional regulator, GntR family. (247 aa)    
Predicted Functional Partners:
SACE_3233
Inosine-uridine preferring nucleoside hydrolase.
     
 0.638
SACE_5981
Regulatory protein GntR, HTH.
  
    0.627
SACE_6064
Transcriptional regulator, GntR family.
  
    0.603
rbsK-2
Sugar kinase in PfkB family; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
     
 0.577
SACE_5708
Transcriptional regulator, GntR family.
  
    0.554
SACE_5169
L-asparagine operon repressor.
  
    0.545
SACE_3480
Transcriptional regulator, GntR-family.
  
    0.520
yqiA
Multidrug transporter.
 
     0.512
SACE_3972
AraC-family transcriptional regulator.
  
  
 0.506
SACE_3235
Acid phosphatase, class B.
       0.478
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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