Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
soxAPutative sarcosine oxidase alpha subunit. (85 aa)    
Predicted Functional Partners:
SACE_3250
Pyridine nucleotide-disulphide oxidoreductase.
 
 0.981
SACE_3248
Secreted oxidoreductase.
 
     0.948
SACE_3252
Proline racemase; Belongs to the proline racemase family.
 
   
 0.944
dapA1
Putative dihydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.938
SACE_3247
Transcriptional regulator, XRE family.
 
    0.607
moeB
Molybdopterin-synthase sulfurylase.
  
  
 0.528
SACE_6218
Thioredoxin.
  
 
 0.488
trxB-2
Thioredoxin reductase; Belongs to the thioredoxin family.
  
 
 0.488
SACE_3881
Sarcosine oxidase subunit beta.
 
     0.470
SACE_0565
Putative bifunctional molybdopterim biosynthesis protein.
  
  
 0.405
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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