STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_3267Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase. (318 aa)    
Predicted Functional Partners:
SACE_6466
LPPG:FO 2-phopspho-L-lactate transferase.
 
   
 0.737
SACE_1248
Mycobacterium tuberculosis paralogous family 11.
  
   
 0.728
SACE_2918
Hypothetical protein.
  
   
 0.686
SACE_3003
FMN-dependent monooxygenase.
  
     0.657
SACE_6139
Hypothetical protein.
 
   
 0.599
SACE_2883
Possible hydride transferase.
  
     0.594
SACE_0162
Hypothetical protein; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.
  
     0.591
SACE_4065
ATP/GTP-binding protein.
  
     0.589
SACE_6467
Nitroreductase family protein.
 
  
 0.587
SACE_3822
Hypothetical protein.
  
     0.584
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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