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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_3290Taurine dioxygenase, TauD/TfdA family. (315 aa)    
Predicted Functional Partners:
SACE_4413
ABC sulfonate transporter, substrate binding component.
 
    0.735
SACE_4415
ABC transporter, permease component.
 
  
 0.576
SACE_3968
Probable NADPH-dependent fmn reductase oxidoreductase protein.
 
    0.485
ssuD1
Alkanesulfonate monooxygenase.
 
  
 0.437
SACE_4414
ABC transporter, ATP-binding component.
 
    0.424
SACE_2696
Putative non-ribosomal peptide synthetase.
 
  
 0.417
SACE_3289
Diguanylate cyclase (GGDEF domain).
       0.403
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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