STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_3418Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (435 aa)    
Predicted Functional Partners:
SACE_3417
Hydrolase.
 
 
 0.981
gabD3
Succinate-semialdehyde dehydrogenase (NAD(P)+); Belongs to the aldehyde dehydrogenase family.
 
 0.926
mmsA1
Methylmalonate-semialdehyde dehydrogenase (acylating).
  
 0.926
mmsA3
Methylmalonate-semialdehyde dehydrogenase (acylating).
  
 0.926
aldA
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.923
mmsA2
Methylmalonate-semialdehyde dehydrogenase (acylating).
  
 0.923
SACE_2895
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.923
SACE_3969
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.923
SACE_4926
Putative betaine aldehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
 
 0.923
SACE_6565
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.923
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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