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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abaB2LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
SACE_3467
DJ-1/PfpI-family transcriptional regulator.
 
     0.636
SACE_1630
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.610
SACE_4609
Probable transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.577
SACE_6276
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.555
SACE_3032
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.546
SACE_3992
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.544
SACE_1372
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.524
SACE_0823
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.506
SACE_6391
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.505
SACE_2644
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.481
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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