STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_3535Putative GAF sensor protein. (257 aa)    
Predicted Functional Partners:
SACE_5577
Hypothetical protein.
  
     0.669
SACE_3534
IclR-family transcriptional regulator.
       0.568
SACE_4972
Cation-binding protein, hemerythrin HHE family.
  
     0.537
SACE_4043
Hypothetical cytosolic protein.
  
     0.481
SACE_3707
Branched-chain amino acid binding protein.
  
 
 0.436
SACE_4631
Putative branched-chain amino acid binding protein.
  
 
 0.436
SACE_4879
ABC transporter substrate-binding protein.
  
 
 0.436
SACE_5413
ABC transporter, substrate binding protein.
  
 
 0.436
SACE_4065
ATP/GTP-binding protein.
 
     0.424
SACE_0294
PE-PGRS family protein.
  
     0.421
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.