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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_3706Pyridoxamine 5'-phosphate oxidase-related,FMN-binding protein. (140 aa)    
Predicted Functional Partners:
SACE_3707
Branched-chain amino acid binding protein.
 
     0.652
SACE_5557
CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
    0.588
SACE_0111
Pyridoxamine 5'-phosphate oxidase-related,FMN-binding.
  
     0.574
SACE_4885
Hypothetical protein; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.
  
     0.534
SACE_1947
Luciferase-like.
  
     0.531
SACE_3267
Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.
  
     0.521
SACE_4065
ATP/GTP-binding protein.
  
     0.500
SACE_4096
Nucleoside-diphosphate sugar epimerase (SulA family).
  
    0.478
SACE_1637
Putative NAD dependent epimerase/dehydratase family.
  
    0.466
SACE_1633
Probable alkanesulfonate monooxygenase.
  
     0.441
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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