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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sidFFerrichrome ABC transporter substrate-binding protein. (336 aa)    
Predicted Functional Partners:
fepD
Putative ferrichrome transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.752
SACE_4303
Hypothetical protein.
  
     0.714
SACE_0621
ABC iron transporter, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.673
SACE_4374
Iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.673
SACE_5744
ABC-type transporter, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.673
sidE
Siderophore-interacting protein.
  
  
 0.658
fepC
Fe(3+) enterobactin transport ATP-binding protein.
  
 
 0.639
fecC
Putative ABC transporter ATP-binding protein.
  
 
 0.639
SACE_4373
Probable iron ABC transporter, ATP-binding protein.
  
 
 0.639
SACE_5745
Iron ABC transporter ATP-binding protein.
  
 
 0.639
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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