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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_4135MaoC-like dehydratase. (162 aa)    
Predicted Functional Partners:
SACE_6875
MaoC domain protein dehydratase.
 
 
 0.977
SACE_4134
Putative membrane protein.
       0.775
SACE_1527
Regulator of polyketide synthase expression-like.
  
     0.695
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
     
 0.577
SACE_4133
ketoacyl-ACP synthase (typeII); Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
     
 0.576
SACE_4131
Ornithine/acetylornithine aminotransferase.
  
  
 0.573
SACE_4130
Hypothetical protein.
   
 0.572
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.562
katA
Catalase; Belongs to the catalase family.
   
 0.555
fabD
[acyl-carrier protein] S-malonyltransferase.
  
   
 0.536
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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