Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SACE_4199Hypothetical protein. (125 aa)    
Predicted Functional Partners:
prsR
Regulator of sigma factor.
  
 
 0.904
SACE_4198
Putative regulatory protein.
  
 
 0.751
SACE_4195
Putative anti-sigma regulatory factor,serine/threonine protein kinase.
  
 
 0.577
rsbW
Anti-sigma factor.
  
 
 0.577
rsbW-2
Anti-sigma factor.
  
 
 0.577
SACE_6594
Hypothetical protein; Thiamine biosynthesis enzyme ThiH.
  
    0.556
prpC3
Magnesium or manganese-dependent protein phosphatase.
  
 
 0.528
SACE_6878
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
  
 0.464
SACE_0097
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
  
 0.430
SACE_2846
Two-component response regulator.
  
  
 0.430
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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