STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysK3-2Putative cysteine synthase. (327 aa)    
Predicted Functional Partners:
arcB4-2
Putative ornithine cyclodeaminase.
 
 
 0.990
arcB4
Putative ornithine cyclodeaminase.
 
 
 0.978
cysK3
Putative cysteine synthase.
  
  
 
0.901
cysE
Serine O-acetyltransferase.
 
 
 0.747
metB
Cystathionine gamma-synthase.
 
 
 0.690
megL
Methionine gamma-lyase.
 
 
 0.685
SACE_6136
Probable cystathionine/methionine gamma-synthase/lyase.
 
 
 0.682
cysS
Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.673
SACE_4279
Non-ribosomal peptide synthetase/polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
   
 0.635
SACE_4280
SyrP-like protein.
 
   
 0.631
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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