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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_4345Hypothetical protein. (307 aa)    
Predicted Functional Partners:
SACE_4344
Mandelate racemase/muconate lactonizing enzyme-like protein.
 
     0.829
SACE_4346
Hypothetical protein.
       0.773
SACE_4347
Putative sodium:solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.668
cloP
O-methyltransferase.
  
  
 0.593
SACE_1038
O-methyltransferase, family 3.
  
  
 0.593
SACE_3384
Caffeoyl O-methyltransferase (partial match).
  
  
 0.593
adhA7
Alcohol dehydrogenase.
  
  
 0.551
SACE_4342
Transcriptional regulator, IclR family/regucalcin.
       0.518
SACE_2249
Putative proteasome component.
  
  
 0.497
pafA
Hypothetical protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.
  
  
 0.497
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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