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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
benABenzoate 1,2-dioxygenase alpha subunit. (464 aa)    
Predicted Functional Partners:
benB
Benzoate 1,2-dioxygenase beta subunit.
 
 0.999
SACE_4377
Oxidoreductase FAD-binding region.
 
 
 0.993
mdlD
Benzaldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
  
 
 0.913
catC
Muconolactone delta-isomerase (MIase).
 
  
 0.877
catA1
Catechol 1,2-dioxygenase.
 
  
 0.858
SACE_4376
Transcriptional regulator, LuxR family.
 
    0.843
SACE_4381
Mandelate racemase/muconate lactonizing enzyme-like protein.
 
  
 0.840
SACE_0824
Aromatic acid transporter, MFS superfamily.
 
  
 0.569
SACE_4380
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
   
 0.549
SACE_3143
Aromatic acid symporter, MFS superfamily.
 
   
 0.483
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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