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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_4484Hypothetical protein, contains GGDEF domain. (474 aa)    
Predicted Functional Partners:
SACE_4887
Diguanylate cyclase/phosphodiesterase.
 
  
 0.821
SACE_7088
Diguanylate cyclase.
  
     0.774
SACE_2183
Hypothetical protein; FOG: GGDEF domain.
 
  
 0.723
SACE_0097
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
0.574
SACE_2846
Two-component response regulator.
 
0.573
SACE_6414
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
 
 
0.570
SACE_6878
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
0.541
whiG
Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.531
SACE_3161
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
0.528
SACE_4370
Sensory box protein.
 
0.528
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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