Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
hcaC2-3Hypothetical protein; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases. (115 aa)    
Predicted Functional Partners:
fprC-3
Ferredoxin reductase.
 
 0.988
SACE_3433
Pyridine nucleotide-disulphide oxidoreductase family protein.
 
 
 0.958
fprD
Ferredoxin reductase.
 
 
 0.958
fprC-2
Ferredoxin reductase.
 
 0.951
hcaC2
Hypothetical protein; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
  
  
 
0.901
hcaC2-2
Hypothetical protein; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
  
  
 
0.900
SACE_5957
uroporphyrin-III C-methyltransferase.
  
  
 0.702
hemD
Uroporphyrinogen III synthase/methyltransferase.
  
  
 0.651
oxyS
Transcriptional regulator (LysR family); Belongs to the LysR transcriptional regulatory family.
     
 0.635
padAd2
Phthalate dioxygenase ferredoxin reductase subunit.
 
  
 0.633
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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