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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadE3_2acyl-CoA dehydrogenase. (388 aa)    
Predicted Functional Partners:
fixB
Electron transfer flavoprotein, alpha subunit.
 
 0.870
fixA
Electron transfer flavoprotein, beta subunit.
 
 
 0.865
SACE_1823
Probable fatty acid oxidation complex alpha subunit.
  
 0.701
SACE_5040
3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 0.701
fadB
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 0.701
SACE_4588
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
 
  0.687
SACE_0025
acyl-CoA dehydrogenase domain protein.
  
     0.591
fadB2
3-hydroxyacyl-CoA dehydrogenase.
 
 0.527
echA
enoyl-CoA hydratase-isomerase.
 
 0.514
narI
Nitrate reductase gamma chain.
     
 0.498
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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