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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_4591Transcriptional regulator, LacI family. (344 aa)    
Predicted Functional Partners:
msmE
ABC transporter sugar-binding protein.
 
  
 0.830
gltB
Putative glutamate synthase(NADPH) large subunit.
    
 
 0.658
gltB-2
Putative glutamate synthase(NADPH) large subunit.
    
 
 0.658
malF
ABC transporter sugar permease.
 
    0.654
lacG
ABC transporter sugar permease.
 
   
 0.644
SACE_4590
Amylo-alpha-1,6-glucosidase.
 
     0.576
rbsC-3
Putative D-ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.454
aglA-2
Alpha-glucosidase.
  
     0.429
ptsH
Phosphocarrier protein hpr.
 
 
 
 0.400
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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