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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_4785Putative glycosyl hydrolase. (125 aa)    
Predicted Functional Partners:
SACE_4784
TetR-family transcriptional regulator.
 
     0.817
SACE_5187
Myo-inositol catabolism IolB protein.
   
    0.717
SACE_2844
TPR repeat.
  
   
 0.688
SACE_4783
Secretory lipase family protein.
 
     0.594
SACE_4961
IS630 family transposase.
  
     0.579
SACE_3721
Methyltransferase; Catalyzes the SAM-dependent methylation of geranyl diphosphate (GPP) to yield (E)-2-methylgeranyl diphosphate (2-MeGPP).
  
     0.554
SACE_7140
Hypothetical protein.
  
     0.523
SACE_2714
Hypothetical protein.
  
     0.490
pglY
Bacteriophage (phiC31) resistance gene PglY.
   
  
 0.488
lamA1
Endo-1,3-beta-glucanase.
 
   
 0.464
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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