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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_4860Integral membrane transporter. (501 aa)    
Predicted Functional Partners:
nuoM
NADH dehydrogenase I chain M.
  
 
 0.794
pks1-3
Modular polyketide synthase.
  
 
 0.787
SACE_4138
Type I PKS modular polyketide synthas.
  
 
 0.779
SACE_4139
Type I modular polyketide synthase.
  
 
 0.775
qcrB
Cytochrome b, membrane protein.
    
 
 0.768
SACE_2630
Modular polyketide synthase.
  
 
 0.765
SACE_4140
Type I modular polyketide synthase.
  
 
 0.765
SACE_5532
Iterative type I polyketide synthase.
  
 
 0.761
sbcD
Putative ATP-dependent dsDNA exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.759
SACE_1785
Protein tyrosine/serine phosphatase.
   
 
 0.758
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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