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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_4906Cyclic nucleotide-binding domain (cNMP-BD) protein. (434 aa)    
Predicted Functional Partners:
SACE_4907
Terpene synthase, metal binding domain protein.
 
     0.944
SACE_4909
Dimethylallyltranstransferase / geranyltranstransferase / geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
 
   
 0.803
SACE_3187
Terpene synthase, metal binding domain protein.
 
     0.786
SACE_3977
Terpene synthase, metal binding domain protein.
  
     0.773
SACE_6524
Tetratricopeptide TPR_2.
   
 
 0.722
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.656
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.623
SACE_4908
Cyclic nucleotide-binding domain (cNMP-BD) protein.
 
    
0.622
SACE_3974
Hypothetical protein.
 
     0.589
SACE_3979
Dimethylallyltranstransferase / geranyltranstransferase / geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
 
   
 0.567
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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