STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idnD-2Putative zinc-binding alcohol dehydrogenase. (334 aa)    
Predicted Functional Partners:
SACE_2733
Alcohol dehydrogenase, zinc-binding.
 
 
 0.758
SACE_4940
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
   
 0.739
ydfJ
Putative membrane transport protein.
  
    0.639
SACE_1946
Putative alcohol dehydrogenase (zinc-binding).
  
  
 0.628
SACE_4519
Alcohol dehydrogenase GroES-like.
 
 
 0.612
SACE_2945
Putative zinc-containing dehydrogenase.
  
     0.601
SACE_4443
NAD/factor-dependent formaldehyde dehydrogenase.
  
  
 0.598
kdgK
2-keto-3-deoxygluconate kinase.
 
  
 0.508
kdgR-2
Transcriptional regulator (IclR family).
       0.463
SACE_4937
Mandelate racemase/starvation sensing protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 0.455
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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