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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SACE_5221DeoR family transcriptional regulator of sugar metabolism. (262 aa)    
Predicted Functional Partners:
eryA
Putative erythritol kinase protein.
 
  
 0.717
lacC
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.698
SACE_2275
Phosphotransferase system, fructose IIC component.
 
  
 0.653
fruB
Putative 6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.650
SACE_5220
HAD-superfamily hydrolase subfamily IA, variant 3.
 
    0.640
serA-5
D-3-phosphoglycerate dehydrogenase, putative; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
    0.576
dak-2
Putative dihydroxyacetone (glycerone) kinase protein.
 
    0.519
SACE_5216
Putative ribose 5-phosphate isomerase.
  
  
 0.481
SACE_6529
Carbohydrate kinase, FGGY.
 
  
 0.435
eryA-2
Putative erythritol kinase protein.
 
  
 0.433
Your Current Organism:
Saccharopolyspora erythraea
NCBI taxonomy Id: 405948
Other names: S. erythraea NRRL 2338, Saccharopolyspora erythraea ATCC 11635, Saccharopolyspora erythraea DSM 40517, Saccharopolyspora erythraea JCM 4748, Saccharopolyspora erythraea NRRL 2338, Saccharopolyspora erythraea str. NRRL 2338, Saccharopolyspora erythraea strain NRRL 2338
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