Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SACE_1689 | SACE_5126 | SACE_1689 | SACE_5126 | DNA polymerase III, epsilon subunit. | Putative ATP-dependent helicase. | 0.547 |
SACE_1689 | end8 | SACE_1689 | SACE_5875 | DNA polymerase III, epsilon subunit. | Endonuclease VIII. | 0.776 |
SACE_1689 | fpg-1 | SACE_1689 | SACE_1351 | DNA polymerase III, epsilon subunit. | formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 0.542 |
SACE_1689 | lhr | SACE_1689 | SACE_1730 | DNA polymerase III, epsilon subunit. | Putative ATP-dependent DNA helicase. | 0.547 |
SACE_1689 | mutM, | SACE_1689 | SACE_0114 | DNA polymerase III, epsilon subunit. | formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 0.542 |
SACE_1689 | nth | SACE_1689 | SACE_0331 | DNA polymerase III, epsilon subunit. | Putative endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.417 |
SACE_1689 | polA | SACE_1689 | SACE_5437 | DNA polymerase III, epsilon subunit. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.931 |
SACE_1689 | recA | SACE_1689 | SACE_1736 | DNA polymerase III, epsilon subunit. | DNA recombination/repair; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.586 |
SACE_1689 | rnc | SACE_1689 | SACE_6100 | DNA polymerase III, epsilon subunit. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.481 |
SACE_5126 | SACE_1689 | SACE_5126 | SACE_1689 | Putative ATP-dependent helicase. | DNA polymerase III, epsilon subunit. | 0.547 |
SACE_5126 | end8 | SACE_5126 | SACE_5875 | Putative ATP-dependent helicase. | Endonuclease VIII. | 0.806 |
SACE_5126 | fpg-1 | SACE_5126 | SACE_1351 | Putative ATP-dependent helicase. | formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 0.593 |
SACE_5126 | mutM, | SACE_5126 | SACE_0114 | Putative ATP-dependent helicase. | formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 0.465 |
end8 | SACE_1689 | SACE_5875 | SACE_1689 | Endonuclease VIII. | DNA polymerase III, epsilon subunit. | 0.776 |
end8 | SACE_5126 | SACE_5875 | SACE_5126 | Endonuclease VIII. | Putative ATP-dependent helicase. | 0.806 |
end8 | fpg-1 | SACE_5875 | SACE_1351 | Endonuclease VIII. | formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 0.927 |
end8 | lhr | SACE_5875 | SACE_1730 | Endonuclease VIII. | Putative ATP-dependent DNA helicase. | 0.858 |
end8 | mutM, | SACE_5875 | SACE_0114 | Endonuclease VIII. | formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 0.832 |
end8 | nth | SACE_5875 | SACE_0331 | Endonuclease VIII. | Putative endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.681 |
end8 | parA | SACE_5875 | SACE_5874 | Endonuclease VIII. | Plasmid partitioning protein. | 0.647 |
page 1 of 3