STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000934765_02145Unannotated protein. (280 aa)    
Predicted Functional Partners:
GCA_000934765_02147
Unannotated protein.
       0.786
GCA_000934765_02146
Unannotated protein.
       0.777
GCA_000934765_02148
Unannotated protein.
       0.678
GCA_000934765_00181
Unannotated protein.
     
 0.541
GCA_000934765_02144
Unannotated protein.
     
 0.540
GCA_000934765_02149
Unannotated protein.
       0.539
GCA_000934765_02143
Unannotated protein.
       0.499
GCA_000934765_00211
Unannotated protein.
  
 
  0.491
GCA_000934765_02141
Unannotated protein.
  
    0.448
GCA_000934765_01918
Unannotated protein.
    
  0.435
Your Current Organism:
Thiomicrospira microaerophila
NCBI taxonomy Id: 406020
Other names: DSM 17327, T. microaerophila, Thioalkalimicrobium microaerophilum, Thioalkalimicrobium microaerophilum Sorokin et al. 2007, Thiomicrospira microaerophila (Sorokin et al. 2007) Boden et al. 2017, UNIQEM U242, gamma proteobacterium ASL8.2, strain ASL8-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.