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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO52935.1Agmatine deiminase; Belongs to the agmatine deiminase family. (335 aa)    
Predicted Functional Partners:
SEO52955.1
N-carbamoylputrescine amidase.
 
 0.997
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
  
 0.904
SEO66075.1
Predicted amidohydrolase.
 
 
 0.727
SEO52907.1
Hypothetical protein.
       0.699
SEO75353.1
Nitrilase.
 
 
 0.675
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.571
SEO52970.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
       0.550
SEO98425.1
Diaminopimelate decarboxylase.
    
 0.540
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.540
SEO52859.1
Lipoprotein-releasing system permease protein.
  
    0.514
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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